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Split what we now call 'Reference data' into 3 categories:

NameUsageOverwritten on upgradeImmutable (towards user)
System dataCore information the module can not work withoutYESYES
Reference dataSample information, schemas, $STUFF to work withOn admin request (LoadReferenceData=true)

YES

Custom overlay

Can override any given reference data, as well as introducing new data

Whatever the user changes is stored here.

NO

(or only if the admin wishes to start with clean slate, like apt-get purge on Debian)

No